STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eea1Early endosome antigen 1. (1354 aa)    
Predicted Functional Partners:
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
     
 0.949
rab5c
RAB5C, member RAS oncogene family.
    
 0.947
LOC101159835
RAB5A, member RAS oncogene family, a.
    
 0.947
LOC101157247
RAB5A, member RAS oncogene family, b.
    
 0.947
lamp1
Lysosomal associated membrane protein 1a.
      
 0.829
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 
 0.709
tubgcp6
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
      
 0.690
LOC101168567
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.681
LOC101174364
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.681
H2MN86_ORYLA
ADP-ribosylation factor 6b.
    
 0.575
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.