STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172920CULLIN_2 domain-containing protein; Belongs to the cullin family. (746 aa)    
Predicted Functional Partners:
SPOP
Uncharacterized protein.
   
 0.992
spopl
Speckle type BTB/POZ protein like b.
   
 0.992
ubxn7
UBX domain protein 7.
   
 0.987
sufu
Suppressor of fused homolog.
     
 0.973
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.969
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.961
fbxw11
F-box and WD repeat domain containing 11a.
   
 0.956
gli1
GLI family zinc finger 1.
    
 0.950
gli3
GLI family zinc finger 3.
    
 0.950
gli2
GLI family zinc finger 2b.
    
 0.948
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.