STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c9h9orf78Zgc:103692. (294 aa)    
Predicted Functional Partners:
slu7
SLU7 homolog, splicing factor.
   
 
 0.872
prpf8
Pre-mRNA processing factor 8.
    
 
 0.865
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.854
med22
Mediator complex subunit 22.
   
  
 0.806
NKAPL
NFKB activating protein like.
   
 
  0.788
prpf38a
Pre-mRNA processing factor 38A.
   
  
 0.741
cwc22
CWC22 spliceosome associated protein homolog.
    
 0.728
syf2
SYF2 pre-mRNA-splicing factor.
   
 
 0.696
fam50a
Family with sequence similarity 50 member A.
    
 0.695
H2MLD6_ORYLA
Zgc:103697.
     
 0.686
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.