STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uchl3Ubiquitin carboxyl-terminal hydrolase. (217 aa)    
Predicted Functional Partners:
ubc
Ubiquitin B.
    
 0.949
rps27a
Ribosomal protein S27a.
    
 0.934
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.831
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
 0.831
psmd14
Proteasome 26S subunit, non-ATPase 14.
   
 0.812
ENSORLP00000045836
Ubiquitin-like domain-containing protein.
   
 0.786
ENSORLP00000027520
Ubiquitin-like domain-containing protein.
   
 0.781
senp8
SUMO peptidase family member, NEDD8 specific.
    
 0.754
LOC101162521
Ubiquitin-like modifier activating enzyme 3.
   
 0.718
UBA3
Ubiquitin like modifier activating enzyme 3.
   
 0.718
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.