STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdlim2PDZ and LIM domain 2 (mystique). (360 aa)    
Predicted Functional Partners:
LOC101172084
MICAL like 1b, duplicate 2.
   
 0.649
ehbp1
EH domain binding protein 1.
   
 0.649
LOC101157163
Uncharacterized protein.
   
 0.649
LOC101157556
Uncharacterized protein.
   
 0.649
pdlim4
PDZ and LIM domain 4.
  
  
0.645
sorbs3
Sorbin and SH3 domain containing 3.
 
  
 0.582
LOC101174195
PDZ and LIM domain 5a.
     
0.574
pdlim7
PDZ and LIM domain 7.
     
0.574
LOC101158216
PDZ and LIM domain 5b.
     
0.574
LOC101165171
Uncharacterized protein.
    
 
0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.