STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a48Solute carrier family 25 member 48; Belongs to the mitochondrial carrier (TC 2.A.29) family. (350 aa)    
Predicted Functional Partners:
etfdh
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
   
  
 0.681
aasdh
Aminoadipate-semialdehyde dehydrogenase.
   
  
 0.668
ubash3b
Ubiquitin associated and SH3 domain containing Ba.
    
 
 0.595
LOC101155198
Si:dkey-16l2.16.
      
 0.590
LOC101168450
Macrophage stimulating 1; Belongs to the peptidase S1 family. Plasminogen subfamily.
      
 0.590
LOC101160361
B30.2/SPRY domain-containing protein.
      
 0.590
rab35
RAB35, member RAS oncogene family b.
      
 0.590
LOC101163077
MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.
    
 
 0.585
ambra1
Autophagy/beclin-1 regulator 1b.
      
 0.576
slc16a9
Solute carrier family 16 member 9a.
   
  
 0.535
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.