sox17 protein (Oryzias latipes) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

sox17

SRY-box containing gene 17. (398 aa)

Predicted Functional Partners:

lef1

0.963

tcf7

0.957

tcf7l1

0.944

LOC111948314

0.944

LOC100049520

0.736

foxa2

0.730

nanog

0.692

ctnnb1

0.690

gata6

0.667

gata4

0.624

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100049520	ctnnb1	ENSORLP00000013122	ENSORLP00000031608	POU domain protein.	Catenin (cadherin-associated protein), beta 1.	0.821
LOC100049520	gata4	ENSORLP00000013122	ENSORLP00000021732	POU domain protein.	GATA binding protein 4.	0.509
LOC100049520	gata6	ENSORLP00000013122	ENSORLP00000022115	POU domain protein.	GATA binding protein 6.	0.448
LOC100049520	nanog	ENSORLP00000013122	ENSORLP00000030179	POU domain protein.	Homeobox domain-containing protein.	0.977
LOC100049520	sox17	ENSORLP00000013122	ENSORLP00000014461	POU domain protein.	SRY-box containing gene 17.	0.736
LOC111948314	ctnnb1	ENSORLP00000030646	ENSORLP00000031608	HMG box domain-containing protein.	Catenin (cadherin-associated protein), beta 1.	0.994
LOC111948314	lef1	ENSORLP00000030646	ENSORLP00000008697	HMG box domain-containing protein.	Lymphoid enhancer-binding factor 1.	0.808
LOC111948314	nanog	ENSORLP00000030646	ENSORLP00000030179	HMG box domain-containing protein.	Homeobox domain-containing protein.	0.547
LOC111948314	sox17	ENSORLP00000030646	ENSORLP00000014461	HMG box domain-containing protein.	SRY-box containing gene 17.	0.944
LOC111948314	tcf7	ENSORLP00000030646	ENSORLP00000037664	HMG box domain-containing protein.	Transcription factor 7.	0.730
LOC111948314	tcf7l1	ENSORLP00000030646	ENSORLP00000014809	HMG box domain-containing protein.	HMG box domain-containing protein.	0.551
ctnnb1	LOC100049520	ENSORLP00000031608	ENSORLP00000013122	Catenin (cadherin-associated protein), beta 1.	POU domain protein.	0.821
ctnnb1	LOC111948314	ENSORLP00000031608	ENSORLP00000030646	Catenin (cadherin-associated protein), beta 1.	HMG box domain-containing protein.	0.994
ctnnb1	lef1	ENSORLP00000031608	ENSORLP00000008697	Catenin (cadherin-associated protein), beta 1.	Lymphoid enhancer-binding factor 1.	0.999
ctnnb1	nanog	ENSORLP00000031608	ENSORLP00000030179	Catenin (cadherin-associated protein), beta 1.	Homeobox domain-containing protein.	0.697
ctnnb1	sox17	ENSORLP00000031608	ENSORLP00000014461	Catenin (cadherin-associated protein), beta 1.	SRY-box containing gene 17.	0.690
ctnnb1	tcf7	ENSORLP00000031608	ENSORLP00000037664	Catenin (cadherin-associated protein), beta 1.	Transcription factor 7.	0.994
ctnnb1	tcf7l1	ENSORLP00000031608	ENSORLP00000014809	Catenin (cadherin-associated protein), beta 1.	HMG box domain-containing protein.	0.994
foxa2	gata4	ENSORLP00000021768	ENSORLP00000021732	Hepatocyte nuclear factor 3-beta; Transcription activator for a number of liver genes. Interacts with the cis-acting regulatory regions of these genes (By similarity).	GATA binding protein 4.	0.687
foxa2	gata6	ENSORLP00000021768	ENSORLP00000022115	Hepatocyte nuclear factor 3-beta; Transcription activator for a number of liver genes. Interacts with the cis-acting regulatory regions of these genes (By similarity).	GATA binding protein 6.	0.670