STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
creld2Cysteine-rich with EGF-like domains 2. (359 aa)    
Predicted Functional Partners:
manf
Mesencephalic astrocyte-derived neurotrophic factor.
   
  
 0.884
gmppb
GDP-mannose pyrophosphorylase B.
   
  
 0.704
hyou1
Hypoxia up-regulated 1.
   
 
 0.671
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 
 0.623
pdia6
Protein disulfide isomerase family A, member 6; Belongs to the protein disulfide isomerase family.
   
  
 0.605
LOC101163102
Stromal cell-derived factor 2.
   
 
 0.599
sdf2l1
Stromal cell-derived factor 2-like 1.
   
 
 0.599
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
  
 0.560
pdia3
Protein disulfide-isomerase.
   
  
 0.474
pdia4
Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family.
   
  
 0.474
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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