STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162553Collagen, type VI, alpha 2. (1024 aa)    
Predicted Functional Partners:
col6a1
Collagen, type VI, alpha 1.
  
0.967
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.913
LOC101159348
Link domain-containing protein.
    
 0.902
LOC101162518
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
  0.900
itga2
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
   
 
 0.772
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.765
LOC101158275
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
   
 0.762
LOC101172910
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.721
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
   
 0.721
itga6
Integrin subunit alpha 6; Belongs to the integrin alpha chain family.
   
 0.721
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.