STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jpt2Uncharacterized protein. (235 aa)    
Predicted Functional Partners:
arsg
Arylsulfatase G.
      
 0.814
yars1
Tyrosine--tRNA ligase.
  
  
 0.758
LOC101171135
Jupiter microtubule associated homolog 1a.
      
0.559
mtrex
Uncharacterized protein.
      
 0.558
cramp1
Cramped chromatin regulator homolog 1.
      
 0.558
hddc3
HD domain containing 3.
  
  
 0.475
corin
Corin, serine peptidase.
      
 0.439
jpt1
Uncharacterized protein.
      
0.429
yars2
Tyrosine--tRNA ligase.
     
 0.423
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.