STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdcd6ipProgrammed cell death 6 interacting protein. (882 aa)    
Predicted Functional Partners:
LOC101156446
Charged multivesicular body protein 4C.
   
 0.899
LOC101173541
Uncharacterized protein.
   
 0.899
chmp4b
Charged multivesicular body protein 4Bb.
   
 0.899
LOC101166028
Zgc:123278.
   
 0.879
tsg101
Tumor susceptibility 101a.
   
 0.879
cep55
Centrosomal protein 55 like.
    
 
 0.864
LOC101156166
Syndecan binding protein (syntenin) 2.
    
 0.855
ubc
Ubiquitin B.
   
 
 0.834
pef1
Penta-EF-hand domain containing 1.
    
 
 0.782
pdcd6
Programmed cell death 6.
    
 
 0.782
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.