STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160509Xin actin binding repeat containing 1. (2468 aa)    
Predicted Functional Partners:
csrp3
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
   
 
 0.630
wdr18
WD repeat domain 18.
   
 0.587
tex10
Testis expressed 10.
   
 0.548
LOC101167500
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.537
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.503
GRXCR2
Glutaredoxin and cysteine rich domain containing 2.
     
 0.470
pjvk
Pejvakin.
     
 0.465
LOC101167129
High mobility group nucleosome binding domain 6.
  
  0.424
LOC101155449
Uncharacterized protein.
   
 0.421
LOC101164086
Actinin, alpha 2b.
   
 0.421
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.