STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168734Ras interacting protein 1. (998 aa)    
Predicted Functional Partners:
krit1
KRIT1 ankyrin repeat containing.
      
 0.558
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 
 0.550
LOC101167748
Rho GTPase activating protein 29a.
    
 0.525
LOC101172644
Uncharacterized protein.
    
 0.525
exoc4
Exocyst complex component 4.
    
 0.494
LOC101159434
RAB, member of RAS oncogene family-like 2.
   
 0.463
LOC101158957
RAB25, member RAS oncogene family a.
   
 0.463
LOC101159906
RAB11B, member RAS oncogene family, b.
   
 0.463
RAB11A
RAB11A, member RAS oncogene family.
   
 0.463
LOC101160399
RAB11B, member RAS oncogene family, a.
   
 0.463
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.