STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164919Uncharacterized protein; Belongs to the peptidase C2 family. (700 aa)    
Predicted Functional Partners:
tln2
Talin 2b.
    
 0.906
LOC101173776
Talin 2a.
    
 0.906
tln1
Talin 1.
    
 0.906
LOC101168213
BCL2 associated X, apoptosis regulator a.
   
 
 0.903
LOC101162579
Calpain 2, (m/II) large subunit b; Belongs to the peptidase C2 family.
  
  
 
0.901
LOC101168687
Zgc:153993.
   
 
 0.901
cast
Uncharacterized protein.
   
 0.680
capns1
Calpain, small subunit 1 b.
   
0.591
LOC101165329
Uncharacterized protein.
   
0.591
H2M6E4_ORYLA
Uncharacterized protein.
   
 
  0.492
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.