STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fndc3bFibronectin type III domain containing 3Ba. (1209 aa)    
Predicted Functional Partners:
p4ha3
Prolyl 4-hydroxylase, alpha polypeptide III.
   
  
 0.641
bahd1
Bromo adjacent homology domain containing 1.
      
 0.603
cwc27
CWC27 spliceosome associated cyclophilin.
     
 0.593
afap1
Actin filament associated protein 1.
      
 0.588
txnrd2
Thioredoxin reductase 2, tandem duplicate 1.
   
  
 0.588
LOC101155771
PPP1R35_C domain-containing protein.
      
 0.578
gmds
GDP-mannose 4,6-dehydratase.
      
 0.577
tatdn2
TatD DNase domain containing 2.
      
 0.545
LOC110014685
Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.
     
 0.520
pdxdc1
Pyridoxal-dependent decarboxylase domain containing 1.
      
 0.511
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.