STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fxr1Fragile X mental retardation, autosomal homolog 1. (679 aa)    
Predicted Functional Partners:
LOC101164818
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
    
 0.978
fmr1
Fragile X mental retardation 1.
  
 
0.964
LOC101169438
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
    
 0.959
LOC101154983
Fragile X mental retardation, autosomal homolog 2.
  
  
0.912
dnajc19
DnaJ (Hsp40) homolog, subfamily C, member 19.
      
 0.740
tdrd3
Tudor domain containing 3.
    
 
 0.701
ttc14
Tetratricopeptide repeat domain 14.
 
 
 0.676
atp11b
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
   
  
 0.624
Fkbp2
Peptidylprolyl isomerase.
      
 0.621
mccc1
Methylcrotonoyl-CoA carboxylase 1 (alpha).
      
 0.578
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.