STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdhd2Haloacid dehalogenase-like hydrolase domain containing 2. (269 aa)    
Predicted Functional Partners:
LOC101172075
Solute carrier organic anion transporter family member.
      
 0.522
SLCO3A1
Solute carrier organic anion transporter family member.
      
 0.522
prkch
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
      
 0.520
hells
Helicase, lymphoid specific.
      
 0.511
snx5
Sorting nexin 5.
      
 0.504
klf5
Progesterone immunomodulatory binding factor 1.
      
 0.501
slc40a1
Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.
      
 0.499
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
      
 0.483
ssbp2
Si:ch211-130m23.3.
      
 0.478
atp5pb
ATP synthase peripheral stalk-membrane subunit b.
   
  
 0.468
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.