snx5 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

snx5

Sorting nexin 5. (375 aa)

Predicted Functional Partners:

snx2

0.968

Snx1

0.956

snx6

0.947

LOC101168453

0.900

LOC101163736

0.865

vps29

0.810

snx8

0.775

igf2r

0.771

LOC101164612

0.765

snx4

0.765

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101163736	LOC101164612	ENSORLP00000002453	ENSORLP00000016137	Sorting nexin 1a.	PX domain-containing protein.	0.440
LOC101163736	LOC101168453	ENSORLP00000002453	ENSORLP00000018289	Sorting nexin 1a.	Si:dkey-28n18.9.	0.689
LOC101163736	igf2r	ENSORLP00000002453	ENSORLP00000045581	Sorting nexin 1a.	Insulin-like growth factor 2 receptor.	0.664
LOC101163736	snx2	ENSORLP00000002453	ENSORLP00000043960	Sorting nexin 1a.	Sorting nexin 2.	0.500
LOC101163736	snx4	ENSORLP00000002453	ENSORLP00000020240	Sorting nexin 1a.	Sorting nexin 4.	0.440
LOC101163736	snx5	ENSORLP00000002453	ENSORLP00000014946	Sorting nexin 1a.	Sorting nexin 5.	0.865
LOC101163736	snx6	ENSORLP00000002453	ENSORLP00000012931	Sorting nexin 1a.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.865
LOC101163736	vps29	ENSORLP00000002453	ENSORLP00000022447	Sorting nexin 1a.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.931
LOC101164612	LOC101163736	ENSORLP00000016137	ENSORLP00000002453	PX domain-containing protein.	Sorting nexin 1a.	0.440
LOC101164612	LOC101168453	ENSORLP00000016137	ENSORLP00000018289	PX domain-containing protein.	Si:dkey-28n18.9.	0.689
LOC101164612	Snx1	ENSORLP00000016137	ENSORLP00000001946	PX domain-containing protein.	Sorting nexin 1b.	0.440
LOC101164612	igf2r	ENSORLP00000016137	ENSORLP00000045581	PX domain-containing protein.	Insulin-like growth factor 2 receptor.	0.532
LOC101164612	snx2	ENSORLP00000016137	ENSORLP00000043960	PX domain-containing protein.	Sorting nexin 2.	0.500
LOC101164612	snx4	ENSORLP00000016137	ENSORLP00000020240	PX domain-containing protein.	Sorting nexin 4.	0.901
LOC101164612	snx5	ENSORLP00000016137	ENSORLP00000014946	PX domain-containing protein.	Sorting nexin 5.	0.765
LOC101164612	snx6	ENSORLP00000016137	ENSORLP00000012931	PX domain-containing protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.767
LOC101164612	snx8	ENSORLP00000016137	ENSORLP00000005829	PX domain-containing protein.	Sorting nexin 8a.	0.463
LOC101164612	vps29	ENSORLP00000016137	ENSORLP00000022447	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.738
LOC101168453	LOC101163736	ENSORLP00000018289	ENSORLP00000002453	Si:dkey-28n18.9.	Sorting nexin 1a.	0.689
LOC101168453	LOC101164612	ENSORLP00000018289	ENSORLP00000016137	Si:dkey-28n18.9.	PX domain-containing protein.	0.689