STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164542Si:dkey-148a17.6; Belongs to the G-protein coupled receptor 1 family. (361 aa)    
Predicted Functional Partners:
LOC101163507
Glutamate receptor, ionotropic, AMPA 4a.
    
 0.595
CHRNA1-2
Cholinergic receptor nicotinic alpha 1 subunit.
      
 0.589
HRH1
Muscarinic acetylcholine receptor; The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins.
     
 0.587
LOC101173805
Glutamate receptor, metabotropic 5a.
     
 0.586
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
      
 0.584
grm5
Glutamate receptor, metabotropic 5b.
     
 0.532
syk
Tyrosine-protein kinase.
     
 0.492
gria2
Uncharacterized protein.
    
 0.485
LOC101157684
Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.
    
  0.422
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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