STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2M904_ORYLASi:dkey-76k16.6. (235 aa)    
Predicted Functional Partners:
aasdh
Aminoadipate-semialdehyde dehydrogenase.
      
 0.690
ivd
Isovaleryl-CoA dehydrogenase.
   
  
 0.567
fbxo16
F-box protein 16.
      
 0.558
suox
Sulfite oxidase.
      
 0.528
ralgapb
Ral GTPase activating protein, beta subunit (non-catalytic).
      
 0.505
lrrc40
Leucine rich repeat containing 40.
      
 0.473
LOC101168000
Cytochrome C oxidase assembly factor 5.
   
    0.463
gsta4
Uncharacterized protein; Belongs to the GST superfamily.
   
  
 0.431
acadl
Acyl-CoA dehydrogenase long chain.
   
  
 0.413
LOC101157367
Glutathione S-transferase mu, tandem duplicate 1; Belongs to the GST superfamily.
   
  
 0.404
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.