STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mkln1Muskelin 1, intracellular mediator containing kelch motifs. (742 aa)    
Predicted Functional Partners:
sec63
SEC63 homolog, protein translocation regulator.
      
 0.842
rmnd5b
Required for meiotic nuclear division 5 homolog B.
    
 
 0.799
ranbp10
Ran binding protein 10.
    
 
 0.749
ranbp9
Uncharacterized protein.
    
 
 0.749
GID8
Uncharacterized protein.
    
 
 0.709
maea
Macrophage erythroblast attacher.
    
 
 0.709
LOC101165057
GID complex subunit 8 homolog b (S. cerevisiae).
    
 
 0.709
LOC101164071
Zgc:66447.
      
 0.693
rnf6
Ring finger protein (C3H2C3 type) 6.
   
  
 0.690
clvs2
Clavesin 2.
      
 0.668
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.