STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc1a2Amino acid transporter. (526 aa)    
Predicted Functional Partners:
LOC101175500
Guanine nucleotide binding protein (G protein), beta polypeptide 2.
   
  
 0.773
gng3
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
  
 0.741
LOC101165386
Solute carrier family 32 member 1.
   
 
 0.699
stmn4
Stathmin-like 4.
   
 
 0.687
LOC101161784
Stathmin; Belongs to the stathmin family.
   
 
 0.687
SNTA1
Syntrophin alpha 1.
      
 0.579
slc7a5
Solute carrier family 7 member 5.
   
  
 0.575
tox2
TOX high mobility group box family member 2.
      
 0.572
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 
 0.564
slc7a7
Solute carrier family 7 member 7.
   
  
 0.563
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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