STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ism1Isthmin 1. (453 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
 
 
 0.900
ENSORLP00000032056
Serine palmitoyltransferase, small subunit A.
    
 0.750
sord
Sorbitol dehydrogenase.
  
 
 0.744
kdsr
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.648
btbd3
BTB (POZ) domain containing 3b.
      
 0.618
tasp1
Taspase, threonine aspartase, 1.
      
 0.618
sptssb
Serine palmitoyltransferase, small subunit B.
    
 0.615
alad
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.601
csf3r
Colony stimulating factor 3 receptor.
      
 0.565
adhfe1
Alcohol dehydrogenase iron containing 1.
    
 0.562
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.