STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdk5r1Cyclin-dependent kinase 5 activator. (302 aa)    
Predicted Functional Partners:
cdk5
Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.
    
 0.898
astn1
Astrotactin 1.
   
  
 0.636
amigo1
Adhesion molecule with Ig-like domain 1.
      
 0.527
MPDZ
Multiple PDZ domain crumbs cell polarity complex component.
   
  
 0.520
MPDZ-2
Uncharacterized protein.
   
  
 0.520
LOC101157949
Immunoglobulin superfamily, member 9b.
      
 0.519
igsf9b
Immunoglobulin superfamily member 9B.
      
 0.513
GRIK2
Glutamate ionotropic receptor kainate type subunit 2.
   
  
 0.504
GRIK2-2
Glutamate ionotropic receptor kainate type subunit 2.
   
  
 0.504
LOC101175393
Macrophage stimulating 1 receptor a.
   
  0.499
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.