STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fjx1Four-jointed box kinase 1. (422 aa)    
Predicted Functional Partners:
H2LIE7_ORYLA
Uncharacterized protein.
   
 
 0.657
fat3
FAT atypical cadherin 3a.
   
 
 0.657
ENSORLP00000045894
Uncharacterized protein.
   
 
 0.639
fat2
FAT atypical cadherin 2.
   
 
 0.587
fat1
FAT atypical cadherin 1a.
   
 
 0.587
fam20b
FAM20B glycosaminoglycan xylosylkinase.
      
 0.565
commd9
COMM domain containing 9.
      
 0.559
gask1b
Golgi associated kinase 1B.
      
 0.559
TANC2
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2.
      
 0.558
FAT4
FAT atypical cadherin 4.
   
 
 0.551
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.