STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox1HMG box domain-containing protein. (322 aa)    
Predicted Functional Partners:
LOC100049520
POU domain protein.
    
 0.749
foxd3
Forkhead box D3.
   
 0.712
LOC101175353
SIX homeobox 7.
   
 
 0.697
nanog
Homeobox domain-containing protein.
    
 0.673
H2LK11_ORYLA
BTB domain-containing protein.
    
 
 0.642
Kctd12
Potassium channel tetramerisation domain containing 12.1.
    
 
 0.641
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.558
pax6
Paired box protein Pax-6; May be a transcription factor with important functions in eye and nasal development; Belongs to the paired homeobox family.
   
 
 0.554
LOC100301611
Forkhead box E3.
   
 0.497
LOC101171502
Uncharacterized protein.
    
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.