STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btbd3BTB (POZ) domain containing 3b. (568 aa)    
Predicted Functional Partners:
tasp1
Taspase, threonine aspartase, 1.
   
  
 0.855
LOC101155895
Isthmin 2b.
      
 0.714
Kif16b
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.667
ism1
Isthmin 1.
      
 0.618
cops2
COP9 signalosome subunit 2.
   
  0.601
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.600
CUL3
Cullin 3; Belongs to the cullin family.
   
 0.600
cul1
Cullin 1b; Belongs to the cullin family.
   
 0.598
cops5
COP9 signalosome subunit 5.
    
  0.598
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
      
 0.592
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.