STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166510Rho guanine nucleotide exchange factor (GEF) 7a. (779 aa)    
Predicted Functional Partners:
git1
G protein-coupled receptor kinase interacting ArfGAP 1.
    
 0.980
LOC105354522
Rac family small GTPase 3b.
   
 0.958
LOC101159016
Uncharacterized protein.
   
 0.958
LOC101175028
Uncharacterized protein.
   
 0.958
LOC101163549
Uncharacterized protein.
   
 0.958
arhgef1
Rho guanine nucleotide exchange factor (GEF) 1b.
    
 0.941
arhgef12
Rho guanine nucleotide exchange factor (GEF) 12a.
    
 0.941
PAK3
Non-specific serine/threonine protein kinase.
    
 0.932
pak1
Non-specific serine/threonine protein kinase.
    
 0.932
LOC101169249
Non-specific serine/threonine protein kinase.
    
 0.928
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.