STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
homezHomeobox and leucine zipper encoding a. (658 aa)    
Predicted Functional Partners:
lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
    
 0.795
trappc12
Trafficking protein particle complex 12.
      
 0.627
gigyf1
GRB10 interacting GYF protein 1a.
    
 
 0.615
LOC101162931
Cardiomyopathy associated 5.
    
 0.609
sspo
Subcommissural organ spondin.
    
 0.604
smg6
SMG6 nonsense mediated mRNA decay factor.
    
 
 0.589
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 
 0.587
ccdc141
Uncharacterized protein.
    
 0.535
myrf
Myelin regulatory factor.
      
 0.514
LOC101175061
Scm polycomb group protein like 2.
    
 0.488
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.