STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUF60Poly-U binding splicing factor b. (526 aa)    
Predicted Functional Partners:
sf3a2
Splicing factor 3a, subunit 2.
   
 0.812
sf3b3
Splicing factor 3b, subunit 3.
    
 0.766
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.750
sf3b1
Splicing factor 3b, subunit 1.
   
 0.745
fubp1
Far upstream element (FUSE) binding protein 1.
   
 
 0.724
khsrp
KH-type splicing regulatory protein.
   
 
 0.724
ENSORLP00000038182
Uncharacterized protein.
   
 0.720
sf3a1
Splicing factor 3a, subunit 1.
   
 0.717
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.706
sf3b2
Splicing factor 3b, subunit 2.
   
 0.701
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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