STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srcapSnf2-related CREBBP activator protein. (4062 aa)    
Predicted Functional Partners:
dmap1
DNA methyltransferase 1 associated protein 1.
   
 0.975
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.971
ruvbl2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 0.970
vps72
Vacuolar protein sorting 72 homolog a.
    
 0.945
actl6a
Actin-like 6A; Belongs to the actin family.
    
 0.940
cfdp1
Craniofacial development protein 1; May play a role during embryogenesis.
    
 0.939
yeats4
YEATS domain containing 4.
    
 0.929
actr6
Actin related protein 6; Belongs to the actin family.
    
 0.927
znhit1
Zinc finger, HIT-type containing 1.
    
 0.924
LOC101172846
Histone H2A; Belongs to the histone H2A family.
   
 0.871
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.