STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ca5aCarbonic anhydrase Va; Belongs to the alpha-carbonic anhydrase family. (314 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.616
nags
N-acetylglutamate synthase.
      
 0.603
LOC101171685
Solute carrier family 25 member 15a; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.588
LOC101165495
Solute carrier family 25 member 15b; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.588
LOC101170109
Neurexophilin; May be signaling molecules that resemble neuropeptides.
   
  
 0.583
nxph2
Neurexophilin; May be signaling molecules that resemble neuropeptides.
   
  
 0.543
grwd1
Glutamate-rich WD repeat containing 1.
   
  
 0.519
gad2
Glutamate decarboxylase 2.
     
 0.507
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.465
RPL5
Ribosomal protein L5b.
    
 
 0.454
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.