STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2MBF1_ORYLALysosomal associated membrane protein 1b. (235 aa)    
Predicted Functional Partners:
lamp2
Lysosomal-associated membrane protein 2.
  
 
0.906
nprl2
NPR2 like, GATOR1 complex subunit.
    
 
 0.870
rptor
Regulatory associated protein of MTOR, complex 1.
    
 
 0.858
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.848
wdr24
WD repeat domain 24.
    
 
 0.844
Depdc5
Uncharacterized protein.
    
 
 0.841
wdr59
WD repeat domain 59.
    
 
 0.835
kptn
Kaptin (actin binding protein).
    
   0.832
SZT2
SZT2 subunit of KICSTOR complex.
    
   0.832
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
    
   0.832
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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