STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gatad1GATA zinc finger domain containing 1. (235 aa)    
Predicted Functional Partners:
phf12
PHD finger protein 12b.
    
 
 0.933
emsy
EMSY transcriptional repressor, BRCA2 interacting.
    
 
 0.737
LOC101169275
MRG domain-containing protein.
    
 
 0.696
LOC101170839
Mortality factor 4 like 1.
    
 
 0.696
LOC101160898
Lysine (K)-specific demethylase 5Ba.
    
 
 0.632
LOC101155110
Lysine (K)-specific demethylase 5Bb.
    
 
 0.632
kdm5c
Lysine (K)-specific demethylase 5C.
    
 
 0.632
kdm5a
Lysine (K)-specific demethylase 5A.
    
 
 0.632
H2M348_ORYLA
Tudor-knot domain-containing protein.
    
 
 0.616
arid4b
Translocase of outer mitochondrial membrane 20.
    
 
 0.616
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.