STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chrac1Chromatin accessibility complex subunit 1. (119 aa)    
Predicted Functional Partners:
pole3
CBFD_NFYB_HMF domain-containing protein.
    
 0.996
nfyb
Nuclear transcription factor Y, beta a.
   
 0.961
nfya
Nuclear transcription factor Y, alpha, like.
    
 0.960
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 
 0.923
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
   
 
 0.898
rsf1
Uncharacterized protein.
     
 0.683
LOC101168000
Cytochrome C oxidase assembly factor 5.
      
 0.607
hells
Helicase, lymphoid specific.
    
 
 0.604
chd1l
Chromodomain helicase DNA binding protein 1-like.
    
 
 0.604
LOC101160234
Bromo domain-containing protein.
    
 0.582
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.