STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157143Protein kinase N3. (928 aa)    
Predicted Functional Partners:
pdpk1
3-phosphoinositide dependent protein kinase 1b.
    
0.746
cdc25b
Rhodanese domain-containing protein.
    
 0.578
LOC101155194
Uncharacterized protein.
   
 0.571
RND1
Rho family GTPase 1.
   
 0.571
RHOB
Ras homolog family member B.
   
 0.571
LOC101173444
Uncharacterized protein.
   
 0.571
LOC101158607
Uncharacterized protein.
   
 0.571
LOC101168783
Rho family GTPase 1b.
   
 0.571
LOC101160539
Uncharacterized protein.
   
 0.571
rnd3
Rho family GTPase 3a.
   
 0.571
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.