STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156161Ig-like domain-containing protein. (329 aa)    
Predicted Functional Partners:
LOC100125525
Uncharacterized protein.
  
  
  0.918
cd74
CD74 molecule, major histocompatibility complex, class II invariant chain a.
     
 0.909
ENSORLP00000035474
Ig-like domain-containing protein.
     
  0.904
LOC111948938
Ig-like domain-containing protein.
  
  
 0.691
espl1
Extra spindle pole bodies like 1, separase.
   
 
 0.689
LOC101173297
Ig-like domain-containing protein.
 
  
0.647
LOC101173297-2
Ig-like domain-containing protein.
 
  
0.643
LOC101163710
Nonclassical MHC class II antigen beta chain.
 
  
0.601
aspm
Abnormal spindle microtubule assembly.
   
  
 0.598
LOC101163459
Nonclassical MHC class II antigen alpha chain.
  
  
 
0.570
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.