STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2MCD1_ORYLAFibulin 2. (576 aa)    
Predicted Functional Partners:
ENSORLP00000044419
Uncharacterized protein.
 
 
  
0.627
cfp
Uncharacterized protein.
 
 
  0.543
usp1
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.507
Frat2
Glycogen synthase kinase binding protein.
      
 0.499
LOC101167732
Microfibril associated protein 5.
   
 
 0.498
MFAP2
Microfibril associated protein 2.
   
 0.472
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
col6a1
Collagen, type VI, alpha 1.
   
 0.466
PIEZO2
Piezo-type mechanosensitive ion channel component.
      
 0.454
ints6
Integrator complex subunit 6.
     
 0.453
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.