STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpd52Tumor protein D52. (235 aa)    
Predicted Functional Partners:
tpd52l1
Tpd52 like 1.
  
 
 
0.812
mal2
Mal, T cell differentiation protein 2 (gene/pseudogene).
   
 
 0.636
snapin
SNAP associated protein.
   
 
  0.630
tpd52l2
Uncharacterized protein.
    
  
0.620
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
     
 0.605
yipf6
Protein YIPF.
     
 0.597
LOC101172824
Uncharacterized protein.
    
  0.593
LOC101174594
Tpd52 like 2a.
    
  
0.553
LOC105354787
Vesicle-associated membrane protein 8 (endobrevin).
     
 0.536
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
     
 0.527
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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