STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1011574604-hydroxyphenylpyruvate dioxygenase. (326 aa)    
Predicted Functional Partners:
hgd
Homogentisate 1,2-dioxygenase.
  
 0.944
tat
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
   
 
 0.861
mccc2
Methylcrotonoyl-CoA carboxylase 2 (beta).
  
 
 0.784
pccb
Propionyl-CoA carboxylase subunit beta.
  
 
 0.784
LOC101163479
Si:ch211-198n5.11.
  
 
 0.784
coq2
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.
     
 0.730
pcca
Propionyl-CoA carboxylase subunit alpha.
  
 
 0.723
nelfcd
Negative elongation factor complex member C/D.
  
 
 0.723
mccc1
Methylcrotonoyl-CoA carboxylase 1 (alpha).
  
 
 0.723
pah
Phenylalanine hydroxylase.
  
  
 0.718
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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