STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhpn1Rhophilin, Rho GTPase binding protein 1. (684 aa)    
Predicted Functional Partners:
tm9sf1
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
   
 0.595
LOC101156446
Charged multivesicular body protein 4C.
   
 0.595
LOC101173541
Uncharacterized protein.
   
 0.595
chmp4b
Charged multivesicular body protein 4Bb.
   
 0.595
stam2
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.
   
 
 0.495
stam
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
   
 
 0.495
LOC101164680
Charged multivesicular body protein 5a.
    
 0.493
diaph2
Diaphanous-related formin 2.
 
  
 0.493
LOC101159542
Charged multivesicular body protein 5b.
    
 0.493
rhof
Ras homolog family member F.
    
 0.489
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.