STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2MD80_ORYLAHyperpolarization activated cyclic nucleotide-gated potassium channel 4. (1429 aa)    
Predicted Functional Partners:
LOC101168057
Hyperpolarization activated cyclic nucleotide-gated potassium channel 1.
  
  
0.600
LOC101172279
Cyclic nucleotide-binding domain-containing protein.
  
  
 
0.586
HCN2
Hyperpolarization activated cyclic nucleotide-gated potassium channel 2b.
  
  
 
0.585
LOC101158796
Cyclic nucleotide-binding domain-containing protein.
  
  
 
0.581
LOC101173821
Hyperpolarization activated cyclic nucleotide-gated potassium channel 5.
  
  
 
0.570
LOC101157708
Hyperpolarization activated cyclic nucleotide-gated potassium channel 3.
  
  
 
0.567
LOC101164003
Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1a.
   
  
 0.567
LOC101173735
Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4.
   
  
 0.566
LOC101159259
Cyclic nucleotide-binding domain-containing protein.
  
  
 
0.550
LOC101155555
Tensin 1b.
   
  
 0.513
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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