STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158548Peptidoglycan recognition protein 5. (167 aa)    
Predicted Functional Partners:
nlrc3
NLR family, CARD domain containing 3.
      
 0.517
mitd1
MIT, microtubule interacting and transport, domain containing 1.
      
 0.487
tmem121
Transmembrane protein 121Ab.
      
 0.485
akap17a
A kinase (PRKA) anchor protein 17A.
      
 0.476
LOC101163952
Uncharacterized protein.
  
  
0.447
serpinf2
SERPIN domain-containing protein; Belongs to the serpin family.
      
 0.414
sntg1
Syntrophin, gamma 1.
      
 0.400
H2MTB4_ORYLA
Syntrophin, gamma 2.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.