STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmx1bLIM homeobox transcription factor 1, beta b. (462 aa)    
Predicted Functional Partners:
LOC101159028
Grainyhead-like transcription factor 2b.
    
 
 0.523
LOC101162780
LIM domain binding 1a.
    
 0.513
ldb2
LIM domain binding 2a.
    
 0.513
LOC101158085
LIM-domain binding 1b.
    
 0.513
rfx4
Regulatory factor X, 4.
      
 0.490
tbx20
T-box transcription factor 20.
    
 
 0.485
Lcorl
Uncharacterized protein.
      
 0.453
usp1
Ubiquitin carboxyl-terminal hydrolase.
      
 0.452
Frat2
Glycogen synthase kinase binding protein.
      
 0.450
mnx1
Motor neuron and pancreas homeobox 1.
    
 
 0.449
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.