STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
a1cfApobec1 complementation factor. (595 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
   0.707
LOC101160551
Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2a.
     
 0.681
LOC101154950
Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2b.
     
 0.681
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.625
LOC101167466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.625
plk4
Polo-like kinase 4 (Drosophila).
      
 0.596
LOC101156188
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
   
  
 0.555
CENPS
Centromere protein S.
      
 0.534
psme3
Proteasome activator subunit 3.
   
  
 0.529
eprs1
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.527
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.