STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vwa8Von Willebrand factor A domain containing 8. (1833 aa)    
Predicted Functional Partners:
ANKS1A
Ankyrin repeat and sterile alpha motif domain containing 1A.
   
 0.681
ppp1r12a
Protein phosphatase 1, regulatory subunit 12A.
   
 0.661
fancm
Uncharacterized protein.
   
 0.653
wbp4
Uncharacterized protein.
      
 0.652
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.612
LOC100049345
Survival of motor neuron 1, telomeric.
    
 0.600
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
   
 
 0.590
pold1
DNA polymerase.
   
 0.585
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.583
ppp1r7
Protein phosphatase 1, regulatory (inhibitor) subunit 7.
    
 0.563
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.