STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164688Mannosidase, endo-alpha. (444 aa)    
Predicted Functional Partners:
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
  
 
 0.570
LOC101169874
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
 0.562
LOC101175170
Uncharacterized protein.
   
 0.562
LOC101172208
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.558
gmps
Guanine monophosphate synthase.
  
 
 0.546
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
  
  
 0.544
LOC101162942
Zgc:174895.
  
 
 0.512
aprt
Adenine phosphoribosyltransferase.
  
 
 0.512
H2MFT6_ORYLA
Uncharacterized protein.
   
 0.510
H2MFS1_ORYLA
Uncharacterized protein.
   
 0.486
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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