STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164648Neuronal pentraxin receptor a. (532 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
    
 0.691
RING1
Ring finger protein 1.
    
 0.691
H2LSI7_ORYLA
Bmi1 polycomb ring finger oncogene 1a.
    
 0.584
pcgf2
RING-type domain-containing protein.
    
 0.584
pcgf5
Polycomb group ring finger 5a.
    
 0.556
eed
Embryonic ectoderm development protein.
    
 0.534
PCGF3
Polycomb group ring finger 3.
    
 0.530
pcgf6
Polycomb group ring finger 6.
    
 0.523
LOC101159094
Polyhomeotic homolog 2b (Drosophila).
    
 0.512
cbfb
Core-binding factor subunit beta.
     
 0.445
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.