STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2ME18_ORYLASMYLE_N domain-containing protein. (623 aa)    
Predicted Functional Partners:
plk2
Serine/threonine-protein kinase PLK.
   
 0.588
plk3
Serine/threonine-protein kinase PLK.
   
 0.588
PLK1
Serine/threonine-protein kinase PLK.
   
 0.588
tubgcp2
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
    
 
 0.537
ckap5
Cytoskeleton associated protein 5.
   
 
 0.518
iqcb1
IQ motif containing B1.
    
 
 0.462
ofd1
OFD1 centriole and centriolar satellite protein.
    
 
 0.459
plk4
Polo-like kinase 4 (Drosophila).
   
 0.439
nphp1
Nephronophthisis 1.
   
 0.410
kars1
Lysine--tRNA ligase.
    
   0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.