STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fopnlFgfr1op N-terminal like. (140 aa)    
Predicted Functional Partners:
isy1
ISY1 splicing factor homolog.
    
   0.904
gsc
Goosecoid.
    
   0.904
ofd1
OFD1 centriole and centriolar satellite protein.
   
 
 0.613
catip
Ciliogenesis associated TTC17 interacting protein.
   
    0.594
pibf1
Progesterone immunomodulatory binding factor 1.
   
 
 0.593
Ttll5
Uncharacterized protein.
   
  
 0.569
bmerb1
BMERB domain containing 1.
      
 0.563
tbc1d31
TBC1 domain family, member 31.
      
 0.560
MARF1
Meiosis regulator and mRNA stability factor 1.
      
 0.558
ENSORLP00000037521
Centrosomal protein 350.
      
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.